I a started learning and applying image analysis with python very recently. I mostly use skimage.
I have confocal microscopy images of cells labelled with mitotracker and dapi.
for labelling mitochondria I wrote this code:
img = io.imread(‘mitoch_image’)
thresh = threshold_yen(img)
binary = img > thresh
blobs = binary > 0.7 * binary.mean()
all_labels = measure.label(blobs)
blobs_labels = measure.label(blobs, background=0)
props_tabl = regionprops_table(blobs_labels, properties=(‘area’,
and this way, I can get the measurements per image,
but I need to get them per cell basis,
how can I use the nuclei image to get the measurements per cell.
what piece of code do I need to add to the one above?
Many many thanks in advance,