We would like to count the number of vesicles in a cell in 3D, using KNIME.
We managed to both segment the the cells and the vesicles, so we have the corresponding label images, but we do not know how to continue.
We found the node “Measure Image Segment Features”, but that does not take two label images as input, but only one label image and one ordinary image.
I guess we would need a node that takes two label images and computes how many labels of the one image are within the labels of the other?! Or maybe there is a different logic?