Issue with some off-color tiles in stitching plugin



I’ve been using the Stitching Plugin to stitch tiled images from Zen. For the most part, it works perfectly, but occasionally, I get a few stitched images with off-color tiles ( see picture ). I’ve tried restitching it but the same error occurs. I’ve also checked to make sure there is nothing wrong with the original file.
Any suggestions?


Hi @meganmcd13,

Welcome to the forum and sorry no one has gotten back to you so far.

Some follow up questions that might help us figure out what’s happening:

  • Are your original tiles multi- or single-channel?
  • Are they 2d or 3d?

Also, there’s a cool new stitching plugin for fiji called the BigStitcher with a lot of nice features. It’s worth checking out!