I am trying to recreate the workflow published in Bray et al. GigaScience 2017. When I run the Illumination correction I have the following issues.
- The pipeline takes around 70h for just 2304 datasets using 24 workers.
- When I run the pipeline with 6 data sets, the analysis finished in 12min (with 6 workers) but the output images were not saved to my output folder. The test analysis ran successfully and there are no errors that show up.
I already have corrected images, so I was wondering if I could simply just use the analysis pipeline from the paper but that will not work because the pipeline refers to the data generated in the illumination correction pipeline. Maybe someone can help me out…
I have attached a screenshot and the pipeline file.
Final2.0.cpproj (113 KB)