Issue when opening CZI image BioFormats 5.9.2


i have a CZI image with 4659 x 2056 pixel. It has two tiles internally. Now I have the following issue:

The issue has most likely to do with the tiles, but I am not sure what to do now. Can you help here? Should if file an issue on GitHub?

Thanks for your help,


Thanks for reporting this, @sebi06. I can definitely reproduce the behavior with the original CZI file; it’s a result of a discrepancy between the XY size that is recorded in the XML and the XY size recorded in the pixel data blocks. Progress towards a fix can be tracked here:

In the meantime, please do let us know if you see the same problem with any other files.