I am trying to pre-process some microCT data in .ISQ format. After installing the BoneJ plugin, I can drag &drop or open ISQ files with the GUI as expected. However, when I try to do the same thing from the command line using openImage in --headless mode, I get the following output/error:
[INFO] null = filename.ISQ
Here’s the mini script that produces the issue:
from ij import IJ import ij.IJ import ij.io.Opener imp = IJ.openImage('/filepath/filename.ISQ');
When I replace the .ISQ file with a TIF or CZI, everything works smoothly. The script is taking its time at the openImage step, so it seems as if it is unable to associate the data with imp.
Any suggestions or comments would be much appreciated.