I have encountered the following error message when I used the attached pipeline to open images in subfolders:
There was a problem running the image analysis. Sorry, it is unclear what the problem is. It would be wise to close the entire CellProfiler program in case something strange has happened to the settings. The output file may be unreliable as well. Matlab says the error is: Invalid MEX-file ‘C:\Program Files\CellProfiler\CPsubfunctions\CPgetdirectories.mexw32’: This application has failed to start because the application configuration is incorrect. Reinstalling the application may fix this problem.
. in the LoadImages module, which is module #01 in the pipeline.
CPgetdirectorytree in C:\Program Files\CellProfiler\CPsubfunctions\CPgetdirectorytree.m (17)
CPretrievemediafilenames in C:\Program Files\CellProfiler\CPsubfunctions\CPretrievemediafilenames.m (81)
LoadImages in C:\Program Files\CellProfiler\Modules\LoadImages.m (615)
AnalyzeImagesButton_Callback in C:\Program Files\CellProfiler\CellProfiler.m (4505)
gui_mainfcn in C:\Program Files\CellProfiler\CellProfiler.m (6265)
CellProfiler in C:\Program Files\CellProfiler\CellProfiler.m (55)
I am using the newest CellProfiler version (1.0.7522) and tried both the windows binaries and the developer’s version on two different machines. The pipeline works fine when I use it only on one folder.
I hope I haven’t missed anything obvious. Let me know if I can provide any additional information. Your help would be very much appreciated!
CPSegmentationPipelineSubFolders.mat (1.42 KB)