I already opened an issue on Github (https://github.com/CellProfiler/CellProfiler/issues/3838) and I apologize for reposting here, but my work relies on this software and so far nothing really solved the issue. I would highly appreciate some help.
Basically I am not able to completely install Cellprofiler for Python (clone the repository). If you read the issue, I manage to install CP 3.1.9 for Python 2.7, but it seems to not recognize all the modules/attributes (e.g. AttributeError: ‘module’ object has no attribute ‘pipeline’")
Would anyone be so kind to step-by-step explain which dependencies to install and how to proceed?
I tried everything from the official guide (https://github.com/CellProfiler/CellProfiler/wiki/Conda-Installation) but it just won’t work. Ideally, I would like to use CellProfiler in combination with CellProfiler Analyst for automated classification of my microscopy data.