Sorry Raquel, I do not understand your question. Did you try my suggestion above?
In more detail you will have to:
- Install Fiji on your computer. Ensure it is subscribed to the Java 8 & BAR update site. Run the updater to ensure BAR is up-to-date
- Install MicroManager on your computer.
- Then symlink BAR files from 1) to 2)
The advantage of this approach is that BAR files in MicroManager will always up-to-date when running Fiji’s updater. The disadvantage is, as mentioned, it does not address any missing dependencies.
Here is a script that does the symlinking in step 3) for you. It looks as if you are running MacOS, so I’ve already assumed default installation paths for MacOS:
## IJ BAR: https://github.com/tferr/Scripts#scripts
## Symlinks BAR from a Fiji installation to a MicroManager installation
## 1. Install Fiji. Ensure it is subscribed to the Java 8 & BAR update site
## 2. Install MicroManager.
## 3. Edit their respective paths below
## 5. Run the script
## Source and destination paths
## Symlink files distributed outside the main jar file
for subdir in /macros/tools /macros/toolsets; do
echo "Symlinking "$subdir
mkdir -p $MICROMANAGER_DIR$subdir
ln -fs $FIJI_DIR$subdir/*.ijm $MICROMANAGER_DIR$subdir
## Symlink main jar file
echo "Symlinking jar file"
ln -fs $FIJI_DIR/plugins/BAR_*.jar $MICROMANAGER_DIR/plugins
You can run the script above by opening Applications/Utilities/Terminal.app and typing at the prompt:
bash -c '<PASTE THE ABOVE SCRIPT HERE>'