Well… this could be caused by using a text editor like Microsoft Word or something that is likely to leave behind odd markup. You’re on linux though right? I’d suggest opening your props file in a few editors and making sure there isn’t any magic going on. I’d trust emacs anyway. Just make sure you’re saving it as plain text.
Also, I’m not sure what SVN rev you are using. Update to 7649.
How are you running Classifier? There are two ways:
…the former will prompt you to navigate to your props file.
What version of Linux are you running? So far the only testing we’ve done is on Debian, but I would be surprised if this would make a difference.
Sorry… I’m not being very helpful, but I’m having a hard time seeing what’s going wrong.
Below I’ve made some other minor corrections to your properties file:
[code]db_type = mysql
db_host = localhost
db_port = 3306
db_passwd = *****
db_name = cellprofiler
db_user = arun
image_table = Per_Image
object_table = Per_Object
image_id = ImageNumber
object_id = ObjectNumber
cell_x_loc = Nuclei_Location_Center_X
cell_y_loc = Nuclei_Location_Center_Y
image_channel_paths = Image_PathName_Origd3, Image_PathName_Origd2, Image_PathName_Origd0
image_channel_files = Image_FileName_Origd3, Image_FileName_Origd2, Image_FileName_Origd0
image_channel_names = DNA, CyclinB, pHH3
image_channel_colors = blue, green, red
object_name = cell, cells
classifier_ignore_substrings = ImageNumber, ObjectNumber, Location, parent
image_tile_size = 50[/code]
If you have jabber or pidgin or some chat program, I can be reached on gchat (adam [dot] n [dot] fraser [at] gmail.com) and maybe we can resolve this more quickly.