I’m trying to improve my pipeline which I’ve tried to tailor to segmenting root cells. However, I’m having trouble improving the segmentation, particularly with respect to erosion/dilation of cells to rejoin those which have been erroneously split and separate those which have been merged. Please note that I am intending to mask the vasculature (the centre of the root, which as you can see is terribly segmented) due to poor staining.
Any advice would be greatly appreciated,
ongoing2.cp (8.22 KB)