I have tracking data generated via TGMM from the Keller Lab, and imported into MaMuT for manual pruning/editing. I’m now hoping to import the tracks from MaMuT into Matlab for further analysis. This is particularly valuable for me as:
(a) I’ve noticed that the object labels generated by TGMM (when directly imported into Matlab using their scripts) are not conserved when importing these results into MaMuT. Ideally, I would like to be able to access in Matlab tracks/objects with particular labels as visualized in MaMuT.
(b) I would like to maintain my manual edits when importing results into Matlab.
I’m relatively new to the various track visualization tools out there so please let me know if I completely missed some documentation on this, though a quick search didn’t lead me to an obvious answer. The scripts for importing TrackMate results into Matlab (e.g. importTrackMateTracks) don’t seem to do the job for MaMuT XMLs.