I am writing a script in Jython that is trying to make use of the Cell Counter plugin commands without actually using the user interface (so that the process is automated for a lot of images). I am having trouble with simply importing the plugin. I came across the plugins.config file which shows the pathway for importation as this: sc.fiji.cellCounter.Cell_Counter
(taken from here:) [https://github.com/fiji/Cell_Counter/blob/master/src/main/resources/plugins.config]
However I am getting the error “No module named cellCounter” while running the import as:
from sc.fiji.cellCounter.Cell_Counter import CellCounter.
I am unsure if I am doing something wrong in the syntax and if there is something more I should be writing.
Any help would be appreciated!