I am just starting using CellProfiler and have a very naive question.
I have a single folder containing numerous tif files. Each tif file contains a single plane.
But some of them belong to the same field, but are different Z positions. They are named something like
I would like to group them in some way so that the input sent on the analysis modules is the full Z-stack.
Then I would like for instance run a projection, etc…
I tried using the grouping tool, based on the z metadata extracted from filenames.
However, the analysis modules all parse each individual plane nonetheless.
How would you achieve this?