Implementing ROI tool in Deep Lab Cut

RyanAvenido · December 11, 2020, 6:28pm

Hello!

Where can I implement the ROI tool in DLC? I’m trying to track how long an object spends time at a certain ROI? I can’t seem to find that function and I don’t know how to integrate the appropriate files onto DLC. Here is the URL for more information.

github.com

PolarBean/DLC_ROI_tool/blob/f75be542c3de0d4727c8da890a7156be0615eb84/ROI_ENV.yml

name: ROI_ENV
channels:
  - conda-forge
  - defaults
dependencies:
  - ca-certificates=2020.6.20=hecda079_0
  - certifi=2020.6.20=py38h32f6830_0
  - easydict=1.9=py_0
  - freetype=2.10.2=hd328e21_0
  - icu=64.2=he025d50_1
  - intel-openmp=2020.0=166
  - jpeg=9c=hfa6e2cd_1001
  - libblas=3.8.0=15_mkl
  - libcblas=3.8.0=15_mkl
  - libclang=9.0.1=default_hf44288c_0
  - liblapack=3.8.0=15_mkl
  - liblapacke=3.8.0=15_mkl
  - libopencv=4.2.0=py38_6
  - libpng=1.6.37=hfe6a214_1
  - libtiff=4.1.0=h885aae3_6

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RyanAvenido · December 11, 2020, 6:24pm

Here is the main webpage for this info:

RyanAvenido · December 11, 2020, 6:27pm

Here is my DLC Screen:

Based on the screen, where can I implement the DLC_ROI_tool?

MWMathis · December 12, 2020, 9:33pm

hi @RyanAvenido this is not within DLC, this is a post-dlc tool :). I have not used it, but it just takes the output h5 after you analyze videos! @PolarBean might be able to give more advice