ImageJ macro out of memory

Dear All,

I have written a macro in imageJ/Fiji and am running a terminal command through python code to go through multiple images, analyze them and produce and save results in their respective folders. When I run through some of the images, I get such message.
Can you please help me.

the command line that I am using is:

java -jar /Applications/Fiji.app/jars/ij-1.50e.jar -ijpath /Applications/Fiji.app/ -macro /Users/erikagedvilaite/Desktop/Wings_Controls/MS1096_25C_wVDRC_females/1151027_023/macro.ijm

error mesage given by imagej in “log” window

>>>>>>>>>>>>>>>>>>>>>>>>>>>
<Out of memory>
<All available memory (123MB) has been>
<used. To make more available, use the>
<Edit>Options>Memory & Threads command.>
>>>>>>>>>>>>>>>>>>>>>>>>>>>

Have a look at the Java options to increase the memory allocated to the Java Virtual Machine (JVM).

2 Likes

In addition to @imagejan’s suggestion: if you use the ImageJ launcher instead of java -jar, the amount of memory is detected and set automatically, to avoid this problem.

1 Like

Thank you very much for all of the help.