I am trying to update some of my scripts from QuPath m2 to m5. I tried to run the following lines and was shown an error in m5.
// this script works as of 9/11/2019 - to be used on images which only have WM and GM lines drawn. This script will sample the areas and tile the greatest GM ROI import qupath.lib.roi.LineROI import qupath.lib.roi.PolygonROI import qupath.lib.geom.Point2 import qupath.lib.objects.classes.PathClassFactory import qupath.lib.objects.PathAnnotationObject import qupath.lib.objects.classes.PathClass import qupath.lib.gui.scripting.QPEx import qupath.lib.common.ColorTools def imageData = QPEx.getCurrentImageData() def server = imageData.getServer() t=server.getAveragedPixelSizeMicrons() //echelle pixel/micron
This is the error I was given:
If anyone could help to clarify what I need to modify in the script I would greatly appreciate it!