I found the mitochek example on https://www.ilastik.org/download.html.
I wanted to try it out with ilastik 1.3.2 against the original data stored in IDR https://idr.openmicroscopy.org/webclient/?show=project-404.
I generate 5D numpy arrays from a collection of 2D-arrays retrieved from IDR then run ilastik headless. This approach works nicely for newly created ilp files.
Unfortunately that approach does not work with the version of ilastik used to create the downloaded ilp files (2014). (headless and npy files not supported)
Is there a way to “upgrade” the ilp files so they can be used with newer versions of ilastik?