Ilastik: upgrade project file

Hello

I found the mitochek example on https://www.ilastik.org/download.html.
I wanted to try it out with ilastik 1.3.2 against the original data stored in IDR https://idr.openmicroscopy.org/webclient/?show=project-404.

I generate 5D numpy arrays from a collection of 2D-arrays retrieved from IDR then run ilastik headless. This approach works nicely for newly created ilp files.

Unfortunately that approach does not work with the version of ilastik used to create the downloaded ilp files (2014). (headless and npy files not supported)
Is there a way to “upgrade” the ilp files so they can be used with newer versions of ilastik?

Thanks
Jean-marie

Hello @j.burel,

the ilastik .ilp file stores the configuration of a workflow. In general you should be able to load .ilp files created with an older version of ilastik, in a newer one (not necessarily the other way round). So I would suggest just using the current ilastik version (maybe the 1.3.3b2 one) with the old project file. This should enable you to process numpy array files.

Hello

Thanks for the tip, but unfortunately in that case the ilp file e.g. pixelClassification.ilp does not open with newer version of ilastik.

Cheers

Jmarie

oh, thanks for making us aware of that. We’ll investigate

That’s great. Let me know when I can try it out again.
We are very interested to run ilastik against IDR data

Jmarie