Ilastik - individual mask export (instead of export all) and import into CP

Image Analysis
#1

Hi, I have a co-culture experiment and trying to identify one population from another by pixel classification in ilastik and importing back to CP. Technically, I am just interested in the xeno population so I was trying to export the mask only instead of exporting all. However I had an error message when trying to export the xeno only. I have attached some of the screenshots below and wondering if I have missed anything?

error message.jpg1302×732 84.7 KB

export all setting.jpg1413×795 95.7 KB

#2

Sounds like a question for the ilastik team, their contact info is here:
http://ilastik.org/community.html

#3

Thanks Anne for the contact :slight_smile:

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