I am using Ilastik to do an object classification. This is working quite well now (thanks Dominik). Now the .csv table I can export seems quite useful for my data.
Since I was going to do Batch processing for all my other images, I was wondering if there was a way to get similar tables for all these images as well as? The standard Batch processing mode seems to only export the object prediction map, I set in the previous step - or is there a way to specify an expot for the table as well as the prediction map?
In advance thanks for your help.
have you configured the table export in your project? If so, it should also export the csv table. It will create a new filename for each of the files in the batch applet (based on their file-names, so these should be unique). This is a undocumented - I’m afraid.
So, should you, for example, configure your table export filename to
myexportfile.csv, ilastik will change the name without asking to
myexportfile-datasetname.csv, where dataset name is an ilastik-generated name of the respective image file.
If you want more intricate control over this process, you should consider using the headless mode, where you can specify the
Great, thank you very much. Now it is working.