I have updated my CP 1.0 to the 9717 version recently. Initially everything worked just fine and I was very happy. Since then things have gone pear shaped. My computer was updated automatically at the institute (don’t know what gets updated, I’ll check though) and since then the identify primary objects does not work with any pipeline on any computer (all Macs with 10.5 or 10.6)! Here is the error message:
There was a problem running the image analysis. Sorry, it is unclear what the problem is. It would be wise to close the entire CellProfiler program in case something strange has happened to the settings. The output file may be unreliable as well. Matlab says the error is: Invalid MEX-file ‘/Applications/CompiledCellProfiler_9717/CellProfiler_mcr/toolbox/images/images/private/imreconstructmex.mexmaci’: dlopen(/Applications/CompiledCellProfiler_9717/CellProfiler_mcr/toolbox/images/images/private/imreconstructmex.mexmaci, 1): Library not loaded: @loader_path/libmwippl.dylib
Referenced from: /Applications/CompiledCellProfiler_9717/CellProfiler_mcr/toolbox/images/images/private/imreconstructmex.mexmaci
Reason: no suitable image found. Did find:
/System/Library/Frameworks/JavaVM.framework/JavaVM/libmwippl.dylib: stat() failed with errno=20. in the IdentifyPrimAutomatic module, which is module #06 in the pipeline.
imreconstruct in /Applications/CompiledCellProfiler_9717/CellProfiler_mcr/toolbox/images/images/imreconstruct.m (75)
imfill in /Applications/CompiledCellProfiler_9717/CellProfiler_mcr/toolbox/images/images/imfill.m (143)
IdentifyPrimAutomatic in /Applications/CompiledCellProfiler_9717/CellProfiler_mcr/Modules/IdentifyPrimAutomatic.m (687)
AnalyzeImagesButton_Callback in /Applications/CompiledCellProfiler_9717/CellProfiler_mcr/CellProfiler/CellProfiler.m (11160)
gui_mainfcn in /Applications/CompiledCellProfiler_9717/CellProfiler_mcr/CellProfiler/CellProfiler.m (12916)
CellProfiler in /Applications/CompiledCellProfiler_9717/CellProfiler_mcr/CellProfiler/CellProfiler.m (57)
We are stuck at the moment and only the developer version works (although it cannot handle analysing subfolders). I would appreciate some help as the queue for the developer version is growing real fast.