IdentifyObjectManually Error

After selecting the ROI in the dialog box and clicking ‘Ok’ I get the following error:

Traceback (most recent call last):
File “cellprofiler\gui\pipelinecontroller.pyc”, line 932, in do_step
File “cellprofiler\modules\identifyobjectsmanually.pyc”, line 114, in run
NameError: global name ‘cpi’ is not defined

Attached are my pipeline and example image.


counting dying cells.cp (11.4 KB)

Hi Scott,

This is a bug that has been noted (and fixed but released as yet). I believe that you can work around this issue by unchecking the “Retain outlines…” setting.


You are correct, that does fix the problem. I guess I don’t really need to retain outlines… just added a save image module so that I don’t have to go through object identification everytime I do the pipeline.