I am trying to repurpose some of the Worm Toolbox features to use in a zebra fish assay I am developing. My hope is to use the IdentifyDeadWorms module to help me identify healthy zebra fish, since in my assay the fish are straight when healthy but curl up when sick. I am able to get good primary object recognition and convert the object to an image as stated in the help manual, but when I run the IdentifyDeadWorms I get the following error. Any ideas?
Traceback (most recent call last):
File “/cc/release_10953/CellProfiler/cellprofiler/pipeline.py”, line 309, in run
File “/cc/release_10953/CellProfiler/cellprofiler/modules/identifydeadworms.py”, line 157, in run
File “/Applications/CellProfiler2.0.app/Contents/Resources/lib/python2.5/scipy/ndimage/morphology.py”, line 394, in binary_erosion
File “/Applications/CellProfiler2.0.app/Contents/Resources/lib/python2.5/scipy/ndimage/morphology.py”, line 250, in _binary_erosion