I am interested in using cell profiler to look at the difference between cells shapes in one image. Basically would like to quantify what is the % of shape 1 to % of shape 2. Is there a way to do this with cell profiler? If not, I could run two separate modules to get cell count of each shape in the sample image, how can I get cell profiler to count one cell shape and not another (distinct shapes) as both cell types will express the fluorescence? Any help would be welcomed, thanks!