How to save figure - identifyPrimAutomatic

cellprofiler

#1

Hello,

is there an automatic way to save either the whole figure or the subplots produced from identifyPrimAutomatic module?

I tried with saveImages module but I did not succeed

thanks.


#2

Hi,

You can use the SaveImages module to save entire display windows. The first variable tells you to enter the module number that you would like to save, then you must enter “fig” as the file format. This will save each figure produced by the analysis. You can then open these “fig” files in MATLAB and save as an image in any format you want. There is currently no way to save the “fig” files in any other format, so in this case you must have MATLAB.

Regards,
Mike