It is my first trial to work with TMAs in Qupath. In v0.2.0-m9 I am not able to make a grid for fluorescent TMAs(*.qptiff, 5 channels). When I run TMA dearrayer, only one TMA annotation appears. What I’ve tried:
- two different TMA files (with 6 and 50 cores),
- older QuPath versions,
- Increased memory up to 8GB,
- made a full image annotation prior to TMA dearrayer.
- deselected all channels but DAPI.
Still I see only one blue circle in the middle of image. Please see printscreen attached.
What else can I try?