How to read from omero the rois in image done with Fiji

Last question which is not an “admin” question. How to read from omero the rois in image done with Fiji. I tested with rois or overlay but they didn’t appear in omero viewer. I know how to add rois by scripting java with Annotations, but is there a way to read directly rois to OMero ?
Philippe

Hi Philippe,
I’m not quite sure what you want to do… Do you want to save the ROIs created in Fiji to OMERO?
In that case have a look at Analyze manually OMERO data using the OMERO plugin for Fiji/ImageJ — OMERO guide 0.2.0 documentation .
Kind Regards,
Dominik

Hi Dominik,
I have images with rois or overlays created inside Fiji. And when I transfer theses images to the OMERO server, omero.viewer don’t display the rois or overlay. I can flatten the images in Fiji but I will loose rois.
Philippe

Hi Philippe,

what you want to do should be covered in Dominik’s link - in particular " To save the ROI and the measurement back to OMERO, go to *Plugins > OMERO > Save ROIs To OMERO* ". It’s a workflow we use fairly often, especially in training, and it works nicely!