I have cloned the source from github (https://github.com/CellProfiler/CellProfiler) then I do not know how to install or run the software. I cannot find any instruction in readme.
Edit: I magaged to find the wiki instruction (https://github.com/CellProfiler/CellProfiler/wiki/Source-installation-(Linux)). There is also a conflict of the package pyzmq between Cellprofiler and ipython2-notebook, the latter of which I uninstalled. This conflict is also reported here: CellProfiler and Jupyter integration issue in Windows machine