I am quite new to CellProfiler but I think I created quite good pipeline for my images from genom-wide RNAi screen.
But the problem is that I am not familiar with programming and this kind of things… so now here comes the question: how to analyse the data in the simplest way? I mean, I saw that I can export them to excel as csv file…but what next? What can I do later with such a file?
I thought at the beginning that the easiest to use will be CellProfiler Analyst but for that I need to export my data to some database? Or I can use csv files in CellProfiller Analyst? If yes, then how can I generate properties file for CPA (when you use database option it is generated itself, right?) But what when I do not want to use database but csv files, how can I get properties file?