I have this script, which I run on FIJI/ImageJ script editor:
import os from ij import IJ, Prefs PATH="/mypath/channel3/crop_level2/" tiffile="04_709_channel-3_R1_C3.tif" infile = os.path.join(PATH,tiffile) print infile imp = IJ.openImage(infile) IJ.setAutoThreshold(imp, "Moments dark"); imp.show() IJ.run(imp, "Analyze Particles...", " display summarize add") IJ.saveAs(imp, "Jpeg", "/mypath/Desktop/01_718_channel-3_R1_C1.jpg") IJ.run("Close")
Every time this code finish. It creates the ROI Manager and Result box that looks like this:
How can I programmatically close and clear this two boxes at then end of my script?
The reason I ask this because, I’de like to test this script many times by changing
tiffile without closing the two windows
will affect the result of next execution.