Hi, I have some brightfield images (RNAscope 2.5 HD Duplex) taken on a Leica microscope and exported in .lifext. For some reason, the images were saved as composite images with the colors in a weird order. I can open them fine in QuPath but the colors are wrong - for some reason they are BGR instead of the standard RGB. When I open the images in ImageJ, I see the same issue but I can manually change the LUTs in each channel to BGR to fix the issue. How can I do this in QuPath?
Left: wrong colors when first opening in ImageJ (RBG)
Right: correct colors when re-assigning LUTs