Hello,
I'm a French girl currently studying in an engineering school in geology. I am doing a thesis on the modeling of olivines and plagioclases in a synthetic basalt. I study small basalt balls (diameter 1mm) created in lab.
My goal is to calculate the volumes of crystals present in the ball. For this, I use photos taken at regular intervals in the ball by X-ray computed tomography method (photo attached).
So I use Fiji to see if it is a good software to perform these calculations. For that I take my file containing the 400 images and I open it.
Not really understanding how Fiji works, I tried various tools, in particular "3D object counter" with which I obtain this table. The results could be interesting, however I have no idea what the values of the columns correspond to. Could someone help me?
Note that I use binarized image for the calculations with 3D object counter.[001.tif|attachment](upload://2gt7kIXeS9qOZdg2w7PTeGiIBn6.tif) (56.4 KB)
Many thanks for your help!
[010.tif|attachment](upload://1n2DZa3aW6n02D3cVDsSQzFlQmt.tif) (506.8 KB)
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you may want to check out the wiki page of the 3D objects counter:
https://imagej.net/3D_Objects_Counter
And in particular the user documentation where the table columns are listed and explained:
Let us know if there are open questions 
Cheers,
Robert
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