I’m currently using CP to apply DAPI nuclei masks onto GFP stained images, using DAPI nuclei as my objects and GFP as my image. For each run of my pipeline, I input two images: 1.) a DAPI image and 2.) the corresponding GFP image, and it works great. The problem is that I have hundreds of DAPI/GFP image sets that I have to analyze and I do not want to restart the pipeline for each set.
Is there a way (preferably via existing modules) to input all of my image sets and have CP run through them all sequentially, then save them all in separate files so none of them get overwritten?