How did I create this z-stack matrix image?


I was playing with Fiji a few months ago and found a really neat tool that allowed me to create a montage of a Z-stack. It was a sort of one-click trick which I would love to use again but I don’t remember how I did it.

The goal is to get something like this.

test-Matrix of Z-stack.tif (3.0 MB)

Ideally could have each channel represented in a row then have the different columns show different z-slices. I know I can do this manually but it would be great if there was a way for this to be done automatically.

I have used the built-in montage creator (magic montage) and have started playing around using FigureJ but none of these tools can really allow me to work with a full z-stack (i have to work with a single image or a maximum projection).

thank you!

Here is a work around that I have found.

-Open Z stack image
-split channels
-concatenate images
create montage (row x column ; channel(n) x slices(n))