I am using cell profiler analyst to classify bacteria (red) related to actin (green). The issue I have is that the thumbnails that the classifier fetches are zoomed in way too much onto the bacteria (see first image attached). Ideally what I would like to have are thumbnails that are zoomed out enough for me to see how the bacteria are related to actin (see second attached image generated in image).
I have tried the zoom tool but all it does is enlarge or minimize the thumbnails. The only other option I have is to open the actual image and manually pick out the bacteria I want to classify. This is a lot of work as I have hundreds of images that need to be analyzed and cycling through the images with the desired bacteria phenotypes is time-consuming.