Help with remove outliers

fiji
imagej

#1

Hey guys!

When I try to use remove outliers on an image threshold it removes most of the small particles I want to remove but it also etches off some of the edges of the particles i want to analyze. Is there anyway to fix this>

Thanks!

-TJ


#2

Good day,

Could you perhaps remove the small particles via excluding them in a ‘Analyze Particles’ step, where you tell the software to create a mask and exclude particles of a certain size?
Objects larger than your chosen size will remain intact.
image
Then analyze further with the mask you’ll have created this way.

Hope this is what you are looking for.


#3

Yeah that worked great!