I am currently using boneJ to calculate the morphometrics from cores from the femoral head. I have calculated BV/TV, BS/BV, Tb.Th, Tb.Sp with no issues.
However, when I run connectivity (after purifying my image) I am getting abnormally high values for Tb.N - 20-30! I have looked in the BoneJ manual and in other forums, but I haven’t found the reasoning for this.
Am I missing a step? I do the following:
- Import stack of CT images
- Set scale
- Crop image around core (cylinder selection)
- Binarise image
- Purify stack
- Run connectivity
- Have very high values for ConnD!
slice114.tif (37.1 KB)