Question related to object tracking - what is the semantics of grouping (example: in DB - group by site, timepoint would give (site1,(t1,t2,t3)),site2, (t1,t2,t3)) - I seem to get the opposite effect here)
I am using the example pipeline for tracking with my own data - there you split data into directories. I have split my files in this way:
./site1 contains 203 files (timepoints) of syntax t1_s1 to t203_s1
same for sites 2 to 12 (12 subdirectories)
I am trying to get CP2 to process for each site a timeseries of 203 images and track on that site. If I say:
- individual images
- text regex
- analyse all subfolders
- group by metadata
- extract metadata from path
when I do this RE, I get conflicts, for files that have t100 and t101 etc and cannot do any processing
I have also tried the option of tracking by site and timepoint, but the outcome was site1_t1, site2_t1, site3_t1, or so it appeared to be, and not the expected site1_t1, site1_t2, site1_t3, using extract metadata from ‘both’. IN this case I called CP2 with files 1-203, and it was going through files as follows: 1, 204, 407, etc.
Please tell me how to set this correctly. Also, I really do not want to split my directories but do all this in one go.