Was is the best way to group files in a way, that I have one handle object in OMERO after import for a multi files experiment?
I have the following sequence of files:
where “ch<>” presents the channels and “stack<>” presents the timepoints. Each file contains a Z-stack.
I thought about 2 possible solutions:
- Import a pattern file:
I know that there is the possibility to create a pattern file. But as far I understand the description under https://docs.openmicroscopy.org/bio-formats/6.1.1/formats/pattern-file.html I need “right character” for interpretion. So “stack” will not be interpreted as timepoints and I want to avoid renaming the files.
- Grouping files by a Bio-Format reader.
I still have a special reader for this kind of files, but I don’t understand how can I group that inside the reader.
Perhaps you know which existing reader has the same functionality, that would be very helpful.