I’ve been using CellProfiller for a couple of applications in both immuno cytochemistry and fluorescence microscopy. It works great in every thing I’ve tried it for so far. The slight problem I have is the general running speed, which breaks down into two parts: 1. I’m using 3800x2000 pixel images in a total of 10 modules on a Core2Quad Q8300 PC with a decent graphics card. Each image takes ~10mins to process (EnhanceOrSuppress features taking the longest). Does this sound OK? could it be improved by perhaps running on a faster, but single-core processor? 2. The windows detailing each cycle that are left open at the end of the process are nearly impossible to manipulate. For example if I want to view my “Identify Primary Objects” window, it may take 30-60 seconds to select this from the taskbar. Once active, the window make take 30-60seconds to zoom in on a section, or even a minute to maximize the window.
I’m running v.10415 on Vista64. Thanks in advance for any help.