Flatten 3D ROIs overlay

Hi all, hi @ThomasBoudier,

Just a quick question, is there a way to flatten the overlay of 3D ROIs on an image ? My goal is to save 3D stacks with the overlay on as a quick check for a user to look at the segmentation.

I tried showing the overlay and flattening but it didn’t work. I also tried 3DObjectsPopulation.draw(ImageHandler) but somehow this drew the ROIs on an incorrect place in the stack as you can see here.

On top of that, this isn’t the overlay I was looking for.

Thanks for your help !

Best,
Laurent

Hi @lguerard,

I think you may want to use the plugin 3D Draw Rois, you will need the original image and the segmented image, it will draw the rois of all objects in all slices.

Hope this helps.

Best,

Thomas

1 Like

Thanks a lot, I didn’t know about this plugin, still discovering things in this suite :slight_smile:

Best,
Laurent