FlagImage + image grouping bug

In CP 2.1.2 (rev 0685250), for a pipeline using FlagImage + Skip image set if flagged and image grouping (see pipeline attached).

Bug upon spreadsheet exportation when some images are skipped within a group.

The pipeline is running fine when no image are skipped, or when processing images from a single group (even when some are skipped).


Error message window:

125_RPA pipeline.cpproj (737 KB)

Thanks for reporting this. I filed a Github issue here: github.com/CellProfiler/CellPro … ssues/1360
Keep checking there, but also we’ll try and post back here when we take a closer look.


I have fixed a couple problems that crop up when measurements aren’t written because of modules downstream of FlagImage. Could you try your pipeline on the trunk build available at cellprofiler.org/cgi-bin/trunk_build.cgi ?


Sorry to let you know that it did not fix the issue (same error as before).