I’m writing a macro for FIJI to count the number of maxima peaks in 3D stacks, within multiple individual ROIs (corresponding to multiple individual nuclei that are present in the images, segmented as 3D ROIs).
Does exist a way to redirect the “3D maxima finder” plugin (or similar) to 3D ROIs?
My final aim is to have “peaks per nucleus”, working with 3D images.
Your help will be really appreciated!!
Thanks in advance,