Fill bubbles with different colors based on their area

imagej

#1

Hello

I have stack of binary images with bubbles, I want to fill the bubbles with different colors based on their area. BioVoxxel plugin does this for single image but it can’t handle stacks. Plus I am only interested in area and not any other morphological parameter. Any suggestions?

Warm regards
Mandar


#2

When you are looking at the bubbles in 3D, you will be analyzing the volume and not the area.
Look into the 3D ROI Manager @ThomasBoudier has written.
He has a few macro functions in this page:
http://imagejdocu.tudor.lu/doku.php?id=plugin:stacks:3d_roi_manager:start

I think the one you are after is this macro which colourises the object based on their volume:
http://imagejdocu.tudor.lu/lib/exe/fetch.php?media=plugin:stacks:3d_ij_suite:macromanager3d2_colorsize.ijm