I have a stack image (845 slices), with 2048X2048 pixels for each slice.
It is a mouse brain image and the raw image was taken at horizontal plane.
I wanted to reslice horizontal plane to Coronal plane so I used the “reslice” function. (Make XYZ to XZY).
However the images after reslicing looks weird and not isotropic (not uniform).
Here you can see some areas of the image (after reslicing) are clear but some areas are not.
Does anyone know what may cause this? Or any ideas about how to do a better reslicing? Thanks
(The resolution became 2048*845 pixels due to the limitation of the original Z-stack number, but I think this shouldn’t be the reason that the image is not uniform?)