Dear Fiji community,
I am experiencing a problem since last week when opening CZI files.
I have created a macro that opens CZI files, including all the series that it contains. Now, unfortunately, my macro started to open only the first image even when that same file has more than one.
The line in question is:
run("Bio-Formats Importer", "open=["+path+dir[filenr]+"] autoscale color_mode=Default open_all_series rois_import=[ROI manager] view=Hyperstack stack_order=XYCZT");
I tried to open these files manually and I still can’t get Fiji to open all the images. I also tried to launch the Bio-Formats Importer but got the same result.
Some updates were made but I have no idea if they have anything to do with this behavior.