Fetch threshold values in CLIJ2?

Hi @haesleinhuepf , apologies for the multiple posts today. Curious if I can fetch the threshold values used in any/all of the threshold commands in CLIJ2?

I am working on a little script that will basically replicate ImageJ’s Auto Threshold Try All function but with the CLIJ2 plugin and would like to be able to fetch each threshold value then print those values to a log.


Hi @Nik ,

No worries. That’s what we have the image.sc forum for. :slight_smile:

Yes, the getAutomaticThreshold function does that.

I will just copy your question to the Q&A of the clij website. Thanks for asking it!



Doh, how did I miss this? :man_facepalming:

Thanks for pointing it out!

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