I have been preparing imaging data with CellProfiler for usage in FCS Express. My experiments were plate based and I am using the metadata field “Well” to designate the different images. When I try to import the .cpout files into FCS Express, the software asks for the Experiment.ini file (this is not something CellProfiler can provide). This website
says standard plate format definition files are available at
but this link is not working anymore and a search for this topic on DeNovo’s website doesn’t yield anything. I have emailed their support, but would like to ask here, too. Does anybody know of these Experiment.ini files and knows where to find them?