Here the issue:
i have run a model in ORBIT and obtained some objects from segmentation
then i have created the ROI in ORBIT and run the model to the entire image.
I followed the instructions for adding the objects to OMERO and in this image you can see in pink the annotation polygon boundaries i have created.
i run the script provided here (changed username and password)
and this is the message i get
When i check the ROI in OMERO i found only 10 which is not the entire number i should have (see green spots in the first image)
Anyone knows why only a handful of segmented objects has been uploaded?
Thanks a lot!