I have the plugin set for my cell profiler 3.1.9 pipeline. What I am trying to do is analyze these cells and find the area of each nucleolus of each cell, so what I did was first identify the primary object as the nuclei, then I set it to measure the size and shape but in export to spreadsheet I set the measurement that I want as being only the area. I put it to export to my desktop in its own folder, and no matter what I try, it doesn’t appear anywhere though it says the analysis is complete. Is there something that I am missing?
Would you be able to attach a copy of the pipeline file?